Microarray Scanning / Feature Extraction

Description

Features

  • – Accepts hybridized slides, acquires images using the SureScan microarray scanner, and quantifies signals using FeatureExtraction software.
  • – Ideal for those with microarray experiment experience but without access to a scanner.
The following analysis equipment is from Agilent Technologies.:
SureScan Microarray Scanner
FeatureExtraction Software

 

Compatible Array Slides

  • – Agilent Microarray

    * If using custom-designed arrays, please send the design file for feature extraction.

  • – Other microarray slides meeting the following specifications:
Slide Glass Fluorescent
1 x 3” (25 mm x 75 mm) glass slide
Width: 24.95 mm to 26.1 mm
Length: 74.8 mm to 76.45 mm
Thickness: 0.9 mm to 1.1 mm
Non-Mirrored slides of low intrinsic fluorescence
Cyanine 3
Cyanine 5
Alexa Fluor 647
Alexa Fluor 555
Alexa Flour 660

 

Deliverables

Item Contents Format Details
Document
Analysis Report
Recording Media
– CD-R
– DVD-R
– USB
Raw data
txt Signal data output from microarray system
Microarray scanned image
tif, bmp Images obtained by scanner, from which raw data is obtained
QC Report
pdf QC report of the array experiment output from microarray system
Analysis Report
pdf PDF data of the analysis report document
  • * Our data storing period is 6 months after delivery. Please keep the data in a safe place as we may ask you to provide the data in case of inquiry or additional analysis request after the storing period has been expired.

 

Price and Domestic Lead-Time

Service Domestic Lead-Time Price
Microarray Scanning and Feature Extraction Approx. 1 week Open price
Options Normalization only Approx. 1 week
Normalization to Differential Expression Gene Extraction
  • * The lead-time may vary according to each order specifications such as the number of analyses.

 

Ordering

Order Flow

Step 01
Inquiry
Please inquire from the inquiry form.
Step 02
Quotation
After confirming the order requirement, we will provide a quotation.
Step 03
Ordering
Please fill the order sheet for your required analysis and send it to array@hssnet.co.jp by E-mail.

スキャン・数値化サービス注文書(JPN)
Step 04
Send Microarray Slide Glass
Please ship your sample to deliver to us during week days.
For details on sample shipping, please refer to the next section on “How to ship your sample”.

How to ship your sample

Slide Glass
Place the slide in a slide case, shield with aluminum foil, protect with cushioning material to prevent damage, include the printed order form, and send it via courier (room temperature) to the address below.

 Please send your order form to: 
Attn. Microarray Analysis Section
Analysis Team
Hokkaido System Science Co., Ltd.
2-1, Shinkawa Nishi 2-1, Kita-ku, Sapporo
001-0932, Japan
Tel: +81-11-768-5901
  • * For any slide glass shipping, please let us know the below information by e-mail.
    1. delivery schedule 2. courier 3. tracking number.
  • * Please make sure that your package will be delivered to us on working days.
  • * Slides will be discarded one week after delivery. If slides return is required, please describe so on your order sheet at the order placement.
  • * Please note that slides are returned free of shipping charge only when they are returned with data delivery.

 

Cautions

  • – Description and scope of the service are subject to changes without notice.
  • – Cancellation of an order will be rejected after production start. If cancellation is due to force majeure, the client will be asked to pay the service up to the cancellation point.
  • – Samples are limited to the P1 level defined in “the Law concerning the Conservation and Sustainable Use of Biological Diversity through Regulations on the Use of Living Modified Organisms” (Cartagena Protocol) issued by Ministry of Education, Culture, Sports, Science and Technology.
  • – HSS will not be responsible for losses a client may incur as a result of the custom analysis service output.

 

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