Standard Pipeline Data Analysis

• Overview
• Workflow
• Data Analysis

Overview

We offer comprehensive data analysis services using our standard pipeline for raw data obtained either in our facility or from external sources.
If you have sequencing data from your own NGS equipment, a nearby sequencing facility, or another service provider, we can process it for you. Feel free to contact us if you need assistance with data analysis.

Workflow

Data Analysis

Details of our standard pipeline analyses are available on individual application pages.

– Genome Resequencing

Mapping & SNP Candidate Detection / Structural Variant Detection

– Microbial Genome Sequencing

De novo Assembly / Gene Region Prediction & Annotation / Antimicrobial Resistance Gene Detection

– Gene Expression Analysis

Expression Analysis / Statistical Significance Testing / GO Analysis / Pathway Analysis

– De novo Transcriptome Sequencing

De novo Assembly / Functional Annotation / Expression Analysis / Detection of Specific Sequences

– Small RNA-Seq

Mapping / miRNA Expression Analysis

– Microbial Community Analysis

Microbial Composition Calculation / α-diversity Calculation / PCoA Plot / Statistical Significance Testing (PERMANOVA) / Statistical Significance Testing (Differential Abundance Analysis) / Integration of Multiple Datasets

– ChIP-Seq

Mapping & Peak Detection / Peak Region Comparison / Motif Detection

– CRISPR Screening

gRNA Read Count / Comparison of gRNA Counts

– Amplicon Sequencing

Read Count / Comparison Table / Target Analysis

We also offer customized analysis solutions for projects that do not fit within these predefined categories. Please contact us for custom analysis inquiries.

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